PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2778_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 153aa    MW: 17814.7 Da    PI: 10.368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2778_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-061644230
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                r++ n rE+ RR r+++ f  L +++ + 
  RrC2778_p5 16 REKRNLREKGRRMRMKDLFCLLSSHVSPT 44
                8899*********************9874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2581464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-101485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-61679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEREREIGEG SSLSLREKRN LREKGRRMRM KDLFCLLSSH VSPTRRQLPV PQLIDQSTSY  60
MIQLKEKVTY LKEKKKTLLG EVRCRSERSS SLLPKLSIHS RDSIIEMNLI ISDNVKRLAL  120
HELMRVFEEE GAQVMSANLQ NLNDRTAYTI IAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651517.11e-83PREDICTED: uncharacterized protein LOC106356276 isoform X1
TrEMBLA0A078IY003e-85A0A078IY00_BRANA; BnaC08g49810D protein
STRINGfgenesh2_kg.1__1131__AT1G10586.14e-73(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-65bHLH family protein